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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48248114_48249334_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48248114 - 48249334
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
CATTCACTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCACT
Flanking Amino Acid:
LGMGTLLWGQLISTIPTSRL
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
64.5
0.33
1
63.2
38.2
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
70.6
0.73
2
93.33
34.8

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042280
48222338 - 48254451
32114
ENSAPLT00000010375
48222338 - 48254451
32114