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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48249518_48254139_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48249518 - 48254139
Intron Length:
4622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGCGTTTTAACC
Flanking Amino Acid:
FRGLNRIQTQIRVVNAFRSS
Intron Amino Acid Position:
1077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.7
0.87
0.8
83.2
31.9
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
58
0.23
1.4
60.32
39.4

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042280
48222338 - 48254451
32114
ENSAPLT00000010375
48222338 - 48254451
32114