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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48278897_48287009_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48278897 - 48287009
Intron Length:
8113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATCTTTTAATT
Flanking Amino Acid:
VSFSADTAGLATSSLDRSLM
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.2
0.66
1
73.6
41.5
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
72.2
0.78
1.1
82
33.1

Associated Gene:

Gene:
POC1B
Ensembl Gene ID:
ENSAPLG00000011048
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011505
48278621 - 48326682
48062