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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48288160_48289464_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48288160 - 48289464
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCACATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
CAACTCAGAATA
Flanking Amino Acid:
FQHTHWVRCAKFSPDGRLIA
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
67.6
0.44
1.2
75
40
Major PPT
73
0.52
1
63
42.6
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
44
-0.4
1.6
48.65
35

Associated Gene:

Gene:
POC1B
Ensembl Gene ID:
ENSAPLG00000011048
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020842
48282975 - 48326682
43708
ENSAPLT00000011505
48278621 - 48326682
48062