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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48293528_48301576_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48293528 - 48301576
Intron Length:
8049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATT
Flanking Amino Acid:
LHDEKLQSVEVNPTFDVTDT
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.5
0.55
1
70.5
39.5
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
64
0.52
1.8
82.28
39

Associated Gene:

Gene:
POC1B
Ensembl Gene ID:
ENSAPLG00000011048
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020842
48282975 - 48326682
43708
ENSAPLT00000011505
48278621 - 48326682
48062