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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48364256_48364779_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48364256 - 48364779
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAG
U12 Branch Point Sequence:
TTTTTTTTCGCT
Flanking Amino Acid:
DEGCKAFYLEGGFSKFQAEF
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
55.5
0.14
1.5
65.8
41
Major PPT
81.9
0.72
0.6
81.4
23.7
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
45.7
-0.2
3.6
82.89
39

Associated Gene:

Gene:
DUSP6
Ensembl Gene ID:
ENSAPLG00000024182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023299
48363853 - 48368148
4296