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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48365218_48366633_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48365218 - 48366633
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GTGTCTTTCTCT
Flanking Amino Acid:
QFFPEAISFIDEARGKNCGV
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
77.9
0.63
0.9
73
37.3
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
42.7
-0.4
3.6
72.08
45.1

Associated Gene:

Gene:
DUSP6
Ensembl Gene ID:
ENSAPLG00000024182
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023299
48363853 - 48368148
4296