Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48404972_48408751_F

Intron Information:

Intron Rank:

146421

Intron Class:

major

Intron Phase:

Intron Coordinates:

48404972 - 48408751

Intron Length:

3780

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGACT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCCTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTCAG

U12 Branch Point Sequence:

TTCTCCTTCAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

36.1

Major BPS

51.1

0.03

1.6

43.2

Major PPT

81.1

0.7

74.1

31.1

Minor 5ss

-1.7

3.2

45.9

Minor BPS

60.6

0.32

2.1

73.91

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028896

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020765

48403480 - 48428358

24879