Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48420187_48428356_F

Intron Information:

Intron Rank:

146423

Intron Class:

major

Intron Phase:

Intron Coordinates:

48420187 - 48428356

Intron Length:

8170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTATTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

TTTTCCTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

78.8

38.3

Major BPS

78.8

0.72

67.9

40.1

Major PPT

81.9

0.72

0.8

81.8

Minor 5ss

43.4

-0.7

2.8

46.2

Minor BPS

81.5

1.07

1.4

95.91

30.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028896

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038335

48408014 - 48428358

20345

ENSAPLT00000020765

48403480 - 48428358

24879