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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48446230_48450863_R

Intron Information:

Intron Rank:
148942
Intron Class:
major
Intron Phase:
Intron Coordinates:
48446230 - 48450863
Intron Length:
4634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
TATTTAGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
79.1
0.65
0.8
72.2
32.6
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
49.3
0.03
2.3
76.69
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020255
48445634 - 48454655
9022