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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48450963_48454564_R

Intron Information:

Intron Rank:
148943
Intron Class:
major
Intron Phase:
Intron Coordinates:
48450963 - 48454564
Intron Length:
3602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
75.3
0.57
0.9
69.8
36.6
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
49.5
0.04
2
71.77
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020255
48445634 - 48454655
9022