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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48464551_48627794_F

Intron Information:

Intron Rank:
130941
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
48464551 - 48627794
Intron Length:
163244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCTGTC
5'SS Class:
major
3'SS Sequence:
GTAAAATTCCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
66.6
39.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
50.7
0.02
1.2
45.8
44.6
Minor 5ss
36
-1.6
3.5
51.5
45.7
Minor BPS
47.8
-0
2.2
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020319
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025453
48464272 - 48629161
164890