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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48642411_48667598_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48642411 - 48667598
Intron Length:
25188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTATTAAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
MKKAQTWIITCFCLQ
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
68.6
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.3
0.44
1
64.1
40.7
Minor 5ss
29.3
-2.4
3.1
32.9
35.6
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
KITLG
Ensembl Gene ID:
ENSAPLG00000011383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011935
48642396 - 48696482
54087