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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48667713_48676939_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48667713 - 48676939
Intron Length:
9227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATCT
Flanking Amino Acid:
TDDVNDIAKLVGNLPNDYMI
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.6
0.64
0.8
74.3
34.9
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
66.5
0.6
1.8
88.81
35.8

Associated Gene:

Gene:
KITLG
Ensembl Gene ID:
ENSAPLG00000011383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011935
48642396 - 48696482
54087