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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48681549_48683558_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48681549 - 48683558
Intron Length:
2010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTACCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TATGTTTTACCC
Flanking Amino Acid:
MACLAFDKNKDFIKENGHLY
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73
34.2
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
74.3
0.55
0.8
67.3
39.1
Minor 5ss
43.2
-0.7
2.9
55.8
48.3
Minor BPS
55.4
0.15
1.7
66.28
39.9

Associated Gene:

Gene:
KITLG
Ensembl Gene ID:
ENSAPLG00000011383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011935
48642396 - 48696482
54087