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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48683722_48684630_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48683722 - 48684630
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
AGTTACATAATG
Flanking Amino Acid:
LPSTVETPENDSRVAVTKTI
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
65.2
41.6
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
79.8
0.67
0.8
79
34
Minor 5ss
37.5
-1.4
3
44.3
45.4
Minor BPS
52
-0
1.9
61.02
40.5

Associated Gene:

Gene:
KITLG
Ensembl Gene ID:
ENSAPLG00000011383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011935
48642396 - 48696482
54087