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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48691932_48692417_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48691932 - 48692417
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATG
Flanking Amino Acid:
GFILGAIYWKKTHPKSRPES
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
58.5
0.13
1.6
62.75
39.2

Associated Gene:

Gene:
KITLG
Ensembl Gene ID:
ENSAPLG00000011383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011935
48642396 - 48696482
54087