About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48692495_48694428_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48692495 - 48694428
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATGT
5'SS Class:
major
3'SS Sequence:
TTTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
CHGCQEENEIRMLQQKEKEH
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
67.5
38.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.4
22.5
Minor 5ss
45.1
-0.5
3
65.2
46
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
KITLG
Ensembl Gene ID:
ENSAPLG00000011383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011935
48642396 - 48696482
54087