Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48694513_48695619_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

48694513 - 48695619

Intron Length:

1107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTTCG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

AAAATTGTAATT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

74.1

37.2

Major BPS

84.4

0.85

1.1

34.5

Major PPT

0.9

0.6

89.8

18.6

Minor 5ss

40.7

-1

2.7

47.6

42.2

Minor BPS

46.2

-0.2

1.9

60.4

37.4

Associated Gene:

Gene:

KITLG

Ensembl Gene ID:

ENSAPLG00000011383

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011935

48642396 - 48696482

54087