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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4870290_4875494_F

Intron Information:

Intron Rank:
141305
Intron Class:
major
Intron Phase:
Intron Coordinates:
4870290 - 4875494
Intron Length:
5205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.5
33.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
46.4
-0.4
3.1
63.9
47.7
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026084
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044449
4870219 - 4876763
6545