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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4875560_4876511_F

Intron Information:

Intron Rank:
141304
Intron Class:
major
Intron Phase:
Intron Coordinates:
4875560 - 4876511
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCGA
5'SS Class:
major
3'SS Sequence:
TTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.3
43.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.1
23.6
Minor 5ss
30.3
-2.3
3.2
35.6
43
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026084
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044449
4870219 - 4876763
6545
ENSAPLT00000034257
4875246 - 4876763
1518