Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48808424_48809249_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48808424 - 48809249

Intron Length:

826

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTTCT

5'SS Class:

major

3'SS Sequence:

TATTCTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TATTCTTTAACA

Flanking Amino Acid:

RPDFKQAYISRGELLLKMNK

Intron Amino Acid Position:

569

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

33.7

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

81.2

0.7

0.9

77.5

35.2

Minor 5ss

-0.1

2.4

68.6

Minor BPS

1.16

0.9

88.63

27.7

Associated Gene:

Gene:

TMTC3

Ensembl Gene ID:

ENSAPLG00000013102

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045080

48803594 - 48837914

34321

ENSAPLT00000013652

48803594 - 48831870

28277