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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48828202_48830035_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48828202 - 48830035
Intron Length:
1834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTTATTTATCT
Flanking Amino Acid:
NDFWGTPMSEERSHKSYRPL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
63.9
0.52
1.8
83.32
37.6

Associated Gene:

Gene:
TMTC3
Ensembl Gene ID:
ENSAPLG00000013102
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013652
48803594 - 48831870
28277
ENSAPLT00000045080
48803594 - 48837914
34321