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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48840555_48842581_F

Intron Information:

Intron Rank:
126991
Intron Class:
major
Intron Phase:
Intron Coordinates:
48840555 - 48842581
Intron Length:
2027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AGTCTTCCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.2
38.2
Major BPS
80
0.75
1
78.6
31
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
37.9
-1.4
2.8
49.6
39.8
Minor BPS
43.7
-0.5
1.7
51.67
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019850
48839701 - 48843206
3506