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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48845132_48846251_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48845132 - 48846251
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
AGCAACAACTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTAGAA
U12 Branch Point Sequence:
TTTGTGTTAGCT
Flanking Amino Acid:
LEKEKKVNEQSSALQNRFIF
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
61.2
0.28
1
58.8
38.1
Major PPT
48.6
-0
0.9
41.3
37.5
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
50.5
0.09
2.3
78.99
43.6

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164