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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48846453_48846807_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48846453 - 48846807
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
TTTAATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTGCTTTAATT
Flanking Amino Acid:
ELVQYLDEIQNLTETNEKLD
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.4
0.75
0.8
77.7
36.2
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
74.2
0.84
1.3
84.22
37.1

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164