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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48846991_48847342_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48846991 - 48847342
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCATCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGATCCAAATT
Flanking Amino Acid:
RKEKEQYKFQVQELSDQLKA
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
69.6
0.44
0.9
60.1
41.2
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
47.4
-0.1
2
68.6
42.8

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164