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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48847433_48847507_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48847433 - 48847507
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCTA
5'SS Class:
major
3'SS Sequence:
TCTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GGTATTTTATCT
Flanking Amino Acid:
AVNAKVEEWKKILASKDDEL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
71
40.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.2
0.9
0.6
88.3
21.4
Minor 5ss
36.8
-1.5
3.2
50.5
45.7
Minor BPS
54
0.21
1.6
69.75
41.1

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164