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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48847631_48849049_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48847631 - 48849049
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAA
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
DRNSIMALQQGVQERDAQIR
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61
38.8
Major BPS
51.9
0.05
1.2
44.7
38.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36.3
-1.6
3.5
51
45.8
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164