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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48852079_48855723_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48852079 - 48855723
Intron Length:
3645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATTTTGT
5'SS Class:
weak_major
3'SS Sequence:
TTATTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
KILSVVTNIANEYLAKELSE
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.2
57.6
41.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86
0.81
0.7
85.8
28.6
Minor 5ss
53.6
0.12
2.4
76.3
39.2
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164