Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48862858_48864217_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48862858 - 48864217

Intron Length:

1360

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGTTC

5'SS Class:

major

3'SS Sequence:

ATTGCTGTTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

TGTAAATGAAAA

Flanking Amino Acid:

QQGLLYKEYQSEKEIWQKES

Intron Amino Acid Position:

726

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

68.4

37.2

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

73.2

0.52

0.9

70.2

40.7

Minor 5ss

47.4

-0.2

67.5

43.9

Minor BPS

44.4

-0.4

1.9

58.4

39.6

Associated Gene:

Gene:

CEP290

Ensembl Gene ID:

ENSAPLG00000011991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012604

48843225 - 48896388

53164