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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48864321_48866239_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48864321 - 48866239
Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
AATGTTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
QDATKIKEYSNLLSALQLDP
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.9
0.67
0.9
72.9
41.4
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164