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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48866471_48867055_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48866471 - 48867055
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTA
5'SS Class:
major
3'SS Sequence:
ATTGTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTGTATTGATT
Flanking Amino Acid:
GKIGHLQRFKEMASFKIAAL
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.8
35.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.6
0.62
0.8
72.9
36.9
Minor 5ss
45.8
-0.4
3.2
63.9
47.7
Minor BPS
53.6
0.19
1.7
73.55
37.6

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164