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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48868884_48869173_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48868884 - 48869173
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTCCTCAAAA
Flanking Amino Acid:
EQAWEQMTKLGDDNAMDKAS
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.4
0.57
0.9
70.7
39
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
67.7
0.55
1.7
77.18
39.5

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164