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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48872760_48873595_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48872760 - 48873595
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATATTTTGATT
Flanking Amino Acid:
SLRMQVLDCQAQSDEKTVIA
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.4
0.66
0.8
78
35.4
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
62.9
0.49
1.2
75.6
35.2

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164