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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48875687_48875775_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48875687 - 48875775
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACAAA
5'SS Class:
major
3'SS Sequence:
TCTTTCTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TCTTTCTGTACA
Flanking Amino Acid:
QNEILSTALKLEEATGSVPD
Intron Amino Acid Position:
1333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
67.6
39.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
84.1
0.77
0.8
79.7
32.4
Minor 5ss
37
-1.5
3.2
48.2
47.5
Minor BPS
58.1
0.25
1.8
71.49
40.4

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164