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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48875911_48876446_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48875911 - 48876446
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AATTCTGTAAAT
Flanking Amino Acid:
TRATCKSLEEKLKEKETALW
Intron Amino Acid Position:
1378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.3
0.52
0.9
64.9
41.3
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
55.9
0.26
2.1
76.83
39.5

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164