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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48876714_48877484_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48876714 - 48877484
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTATG
5'SS Class:
major
3'SS Sequence:
TTTGAACTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTGAACT
Flanking Amino Acid:
YQHLLAKAREEQEEIAKKHE
Intron Amino Acid Position:
1467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.6
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.8
0.44
1
63.4
41.8
Minor 5ss
38
-1.4
3.1
50.7
45.8
Minor BPS
71.3
0.75
1.3
85.31
34.6

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164