About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48877593_48878161_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48877593 - 48878161
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCTGTTTTACA
Flanking Amino Acid:
SLNKFKQTALELMEKPSSLP
Intron Amino Acid Position:
1503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
54.2
0.13
2.1
70.65
41.9

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164