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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48878359_48878999_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48878359 - 48878999
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TATTTTATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATATATTAATT
Flanking Amino Acid:
KIKEFETIRAQLQKKHTVDV
Intron Amino Acid Position:
1568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.6
0.58
0.9
76.1
37.4
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
58.6
0.35
1.6
73.49
36.9

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164