About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48879561_48879645_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48879561 - 48879645
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTTACT
Flanking Amino Acid:
IVDRETKGLMAQIEELNNQI
Intron Amino Acid Position:
1686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.6
0.8
0.6
78.7
30.2
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
65
0.55
1.6
84.12
36.5

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164