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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48879868_48880449_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48879868 - 48880449
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGTG
5'SS Class:
major
3'SS Sequence:
TATAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TAAACTTTAAGT
Flanking Amino Acid:
RIRRLTSSIQNKADEQNLTD
Intron Amino Acid Position:
1760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63.2
41.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81
0.7
0.9
77.5
40.9
Minor 5ss
32
-2.1
3.8
46.1
49.1
Minor BPS
61.7
0.45
1.7
74.83
41.6

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164