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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48880573_48881926_F

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48880573 - 48881926
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GCAGACTTCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAGTACATAATT
Flanking Amino Acid:
RKSVRRQEDKEEIIRWEESK
Intron Amino Acid Position:
1801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
49.8
-0
1.1
44.7
41.1
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
53
0.17
1.8
69.92
40.7

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164