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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48882064_48883002_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48882064 - 48883002
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGGATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ATTTACTGGATG
Flanking Amino Acid:
QFSTLKELYTKAEKEKITLQ
Intron Amino Acid Position:
1846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
79.2
0.72
1
75
40
Major PPT
68.7
0.42
1.1
61.2
44.3
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
52.2
-0
1.8
62.64
39.2

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164