About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48883895_48886083_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48883895 - 48886083
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTATGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTAATAATA
Flanking Amino Acid:
YSRETYSRPSTSGVGSNDQY
Intron Amino Acid Position:
1940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
80.6
29.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.6
0.44
1.1
71.7
37.5
Minor 5ss
40
-1.1
2.8
49.9
46.4
Minor BPS
54.4
0.14
1.8
70.56
35.1

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164