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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48886216_48886483_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48886216 - 48886483
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TGCTTATCAATT
Flanking Amino Acid:
QANRDLPRLKDQVGDLKEMC
Intron Amino Acid Position:
1984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.8
Major BPS
79
0.72
1
80.3
31.7
Major PPT
70.8
0.47
1.7
84.6
36
Minor 5ss
46.1
-0.4
2.9
66.5
44.4
Minor BPS
50.7
0.1
1.8
69.71
41.4

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164