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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48888399_48888729_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48888399 - 48888729
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGATT
5'SS Class:
major
3'SS Sequence:
GTTTACTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
GLEQENEKLKSEMEKMKLHL
Intron Amino Acid Position:
2068

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
73.6
43
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.2
0.52
0.9
71
39.7
Minor 5ss
42.7
-0.8
3.5
66.1
45
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164