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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48889351_48892775_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48889351 - 48892775
Intron Length:
3425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
RKSSNSVVVTRMQETKLKEL
Intron Amino Acid Position:
2166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
90.1
0.9
0.8
85.7
33.5
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164