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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48892918_48894663_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48892918 - 48894663
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AACTTGTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
DKNLKDLKEQIEFLKQFSED
Intron Amino Acid Position:
2214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
62.6
0.28
1.1
64.6
40.8
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164