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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48894738_48894869_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48894738 - 48894869
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TTTTATATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTAAAAT
Flanking Amino Acid:
QGLIRELQLLRSTNNQLEKE
Intron Amino Acid Position:
2238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.3
0.82
0.8
78.3
39.6
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
59.8
0.38
1.7
78.79
37.6

Associated Gene:

Gene:
CEP290
Ensembl Gene ID:
ENSAPLG00000011991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012604
48843225 - 48896388
53164